From fc00ded9717a43fc497976e5ceccfbce2889512f Mon Sep 17 00:00:00 2001 From: Cyril Pernet Date: Mon, 1 Jul 2024 09:36:44 +0200 Subject: [PATCH] Update spmup_BIDS_1rstlevel.m --- bids/spmup_BIDS_1rstlevel.m | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/bids/spmup_BIDS_1rstlevel.m b/bids/spmup_BIDS_1rstlevel.m index 6150764..08cda98 100644 --- a/bids/spmup_BIDS_1rstlevel.m +++ b/bids/spmup_BIDS_1rstlevel.m @@ -22,7 +22,12 @@ % % usage after preprocesing is done, i.e. just run stats modelling % -% +% Usage note: for resting state data the design matrix includes motion, typically with a voltera expansion, and some 'nuisance' either WM/CSF or compcorr-like outputs. +% We recommend no scrubbing as recent work shows this is deleterious. The SPM machinery is used to high-pass the data simultaneously at 0.001 Hz. +% References: (1) Martin A. Lindquist, Stephan Geuter, Tor D. Wager, Brian S. Caffo (2019). Modular preprocessing pipelines can reintroduce artifacts into fMRI data. +% Hum Brain Mapp. 40. doi: 10.1002/hbm.24528 (2) Damon Đ Phạm, Daniel J. McDonald, Lei Ding, Mary Beth Nebel, Amanda F. Mejia (2023) .Less is more: balancing noise +% reduction and data retention in fMRI with data-driven scrubbing. NeuroImage, 270, https://doi.org/10.1016/j.neuroimage.2023.119972 +% % Cyril Pernet % -------------------------- % Copyright (C) SPMUP Team