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Recently, we have collaborators that report truncation of tifffiles written at the steinbock preprocess imc images step here, presuemably because of the ImageJ 4GB size limit.
I believe that this could be resolved if the pipeline were able to detect when a sufficiently large array should be written as big tiff or not. It appears that this option is not used currently:
Related to: cgohlke/tifffile#279
Recently, we have collaborators that report truncation of tifffiles written at the
steinbock preprocess imc images
step here, presuemably because of the ImageJ 4GB size limit.I believe that this could be resolved if the pipeline were able to detect when a sufficiently large array should be written as big tiff or not. It appears that this option is not used currently:
steinbock/steinbock/io.py
Line 191 in 7b73f29
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