From eca77235fff3bbf1d3f9e8be5f1bbaac589a00b4 Mon Sep 17 00:00:00 2001 From: Mike Gevaert Date: Wed, 14 Sep 2022 11:57:22 +0200 Subject: [PATCH] fix readme --- README.rst | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.rst b/README.rst index 0d958db..c466b98 100644 --- a/README.rst +++ b/README.rst @@ -249,7 +249,7 @@ region volumes). Fit transfer functions from mean region intensity to neuron density ---------------------- +------------------------------------------------------------------- We fit here transfer functions that describe the relation between mean ISH expression in regions of the mouse brain and literature regional density estimates (see `Rodarie et al. (2021)`_ for more @@ -318,7 +318,8 @@ transfer functions computed previously (first density estimates). --output-dir=data/ccfv2/density_volumes/ Compute ME-types densities from a probality map ---------------------------- +----------------------------------------------- + Morphological and Electrical type densities of inhibitory neurons in the isocortex can be estimated using Roussel et al.'s pipeline. This pipeline produces a mapping from inhibitory neuron molecular types (here PV, SST, VIP and GAD67) to ME-types defined in `Markram et al. (2015)`_.