Add container-ontology back as a dependency

[bbartley]

As a result of #94 and to deploy paml as a binary wheel on PyPI, the paml-check and container-ontology dependencies were removed. This caused import errors in demo notebooks and regression tests which were not easy to resolve simply by marking tests as expected failures. Instead, these test scripts were renamed to avoid discovery by pytest .

Once container-ontology is deployed as a wheel, it should be added back to the setup.py script. See Bioprotocols/container-ontology#13

To restore the tests, DISABLED_execution.py and DISABLED_convert.py should be changed back to test_execution and test_convert to re-enable discovery. Also test_range_reduction should be unmarked as an expected failure.

The .github/workflow/ should also be updated to restore tests on the demo notebooks.