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bioconductor-working-groups.tex
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bioconductor-working-groups.tex
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% Options for packages loaded elsewhere
\PassOptionsToPackage{unicode}{hyperref}
\PassOptionsToPackage{hyphens}{url}
%
\documentclass[
]{book}
\usepackage{amsmath,amssymb}
\usepackage{lmodern}
\usepackage{ifxetex,ifluatex}
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage{textcomp} % provide euro and other symbols
\else % if luatex or xetex
\usepackage{unicode-math}
\defaultfontfeatures{Scale=MatchLowercase}
\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
\fi
% Use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\IfFileExists{microtype.sty}{% use microtype if available
\usepackage[]{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
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\usepackage{xcolor}
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
\hypersetup{
pdftitle={Bioconductor Working Groups: Guidelines and activities},
pdfauthor={Kevin Rue-Albrecht; Stephanie Hicks; Lori Shepherd},
hidelinks,
pdfcreator={LaTeX via pandoc}}
\urlstyle{same} % disable monospaced font for URLs
\usepackage{longtable,booktabs,array}
\usepackage{calc} % for calculating minipage widths
% Correct order of tables after \paragraph or \subparagraph
\usepackage{etoolbox}
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% Allow footnotes in longtable head/foot
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\usepackage{graphicx}
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\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
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% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
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% Set default figure placement to htbp
\makeatletter
\def\fps@figure{htbp}
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\setcounter{secnumdepth}{5}
\usepackage{booktabs}
\ifluatex
\usepackage{selnolig} % disable illegal ligatures
\fi
\usepackage[]{natbib}
\bibliographystyle{apalike}
\title{Bioconductor Working Groups: Guidelines and activities}
\author{Kevin Rue-Albrecht \and Stephanie Hicks \and Lori Shepherd}
\date{2022-01-14}
\begin{document}
\maketitle
{
\setcounter{tocdepth}{1}
\tableofcontents
}
\hypertarget{welcome}{%
\chapter*{Welcome}\label{welcome}}
\addcontentsline{toc}{chapter}{Welcome}
\hypertarget{about-bioconductor}{%
\section*{About Bioconductor}\label{about-bioconductor}}
\addcontentsline{toc}{section}{About Bioconductor}
\begin{center}\includegraphics[height=200px]{https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/Bioconductor/Bioconductor} \end{center}
\href{https://bioconductor.org/}{\emph{Bioconductor}} provides tools for the analysis and comprehension of high-throughput genomic data \citep{huber2015orchestrating}.
\href{https://bioconductor.org/}{\emph{Bioconductor}} uses the statistical programming language \citep{r2022}, and is open source and open development. It has two releases each year, and an active user community.
\href{https://bioconductor.org/}{\emph{Bioconductor}} is also available as \href{https://bioconductor.org/help/docker/}{Docker} images.
\hypertarget{contribute}{%
\section*{Contribute}\label{contribute}}
\addcontentsline{toc}{section}{Contribute}
This book is open-source and hosted at \url{https://github.com/Bioconductor/BiocWorkingGroups}.
Contributions are welcome and encouraged in the form of forks and pull requests.
\hypertarget{appendix-appendix}{%
\appendix}
\hypertarget{booknews}{%
\chapter{NEWS}\label{booknews}}
\hypertarget{version-1.0.0-2022-01-14}{%
\section{Version 1.0.0 (2022-01-14)}\label{version-1.0.0-2022-01-14}}
\begin{itemize}
\tightlist
\item
Set up bookdown template.
\end{itemize}
\bibliography{book.bib,packages.bib}
\end{document}