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"Invalid BioPAX object to wrap as node" warnings #32

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IgorRodchenkov opened this issue Aug 25, 2017 · 1 comment
Open

"Invalid BioPAX object to wrap as node" warnings #32

IgorRodchenkov opened this issue Aug 25, 2017 · 1 comment

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@IgorRodchenkov
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@ozgunbabur , I see lots of warnings in PC logs (cpath2, PC9, which uses Paxtools) like:
WARN o.b.p.q.w.GraphL3Undirected - Invalid BioPAX object to wrap as node. Ignoring: http://identifiers.org/wikipathways/WP143/dd235

Why is this a warning, is this a problem, bug?.. If not, why to log as warning instead of debug?..
@IgorRodchenkov
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@ozgunbabur
Well, I am going to edit that confusing message (it's not about valid or invalid BioPAX at all) and change its level to 'debug'. Just curious, why Gene objects should be skipped there?

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@IgorRodchenkov