mkdocs.yml

site_name: Flexynesis Documentation
theme:
  name: readthedocs #mkdocs
  highlightjs: true
  hljs_languages:
    - yaml

nav:
  - Home: index.md
  - Getting Started: getting_started.md
  - Command Line Interface: commandline.md
  - Using Flexynesis on usegalaxy.eu: running_on_galaxy.md
  - API: 
    - Model Classes: 
      - DirectPred: models.direct_pred.md
      - GNN: models.gnn.md 
      - Supervised VAE: models.supervised_vae.md 
      - MultiTripletNetwork: models.triplet_encoder.md
      - CrossModalPred: models.crossmodel_pred.md 
    - Network modules: modules.md
    - Data Importer: data.md 
    - Feature Selection: feature_selection.md
    - Training: main.md
    - Utility Functions: utils.md

plugins:
  - search
  - mkdocstrings:
      handlers:
        python:
          selection:
            docstring_style: "google"
          rendering:
            show_source: true