pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <packaging>war</packaging>
    <artifactId>negotiator</artifactId>
    <version>2.8.1</version>
    <groupId>eu.bbmri-eric</groupId>

    <distributionManagement>
        <repository>
            <id>github</id>
            <name>GitHub Packages</name>
            <url>https://maven.pkg.github.com/BBMRI-ERIC/negotiator-v2</url>
        </repository>
    </distributionManagement>



    <parent>
        <artifactId>parent</artifactId>
        <groupId>de.samply</groupId>
        <version>10.1.2</version>
    </parent>


    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>

        <version.samply.webjar>2.0.1</version.samply.webjar>
        <version.samply.auth.client>1.0.4</version.samply.auth.client>
        <version.samply.common.util>1.0.0</version.samply.common.util>
        <version.samply.common.mailing>2.0.0</version.samply.common.mailing>
        <version.samply.directory.client>2.0.3</version.samply.directory.client>
        <version.samply.negotiator.dto>2.0.0</version.samply.negotiator.dto>
        <version.samply.share.dto>4.0.0</version.samply.share.dto>
        <version.swagger.core>2.1.4</version.swagger.core>


        <database.server>localhost</database.server>
        <database.port>5432</database.port>
        <database.name>negotiator</database.name>
        <database.username>negotiator</database.username>
        <database.password>negotiator</database.password>

        <timestamp>${maven.build.timestamp}</timestamp>
        <maven.build.timestamp.format>yyyy-MM-dd HH:mm</maven.build.timestamp.format>

        <powermock.version>2.0.2</powermock.version>
    </properties>

    <dependencies>

        <!-- https://mvnrepository.com/artifact/com.googlecode.json-simple/json-simple -->
        <dependency>
            <groupId>com.googlecode.json-simple</groupId>
            <artifactId>json-simple</artifactId>
            <version>1.1.1</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.junit/junit5-engine -->
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <version>5.8.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <version>5.8.2</version>
            <scope>test</scope>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.junit.jupiter/junit-jupiter-params -->
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-params</artifactId>
            <version>5.8.2</version>
            <scope>test</scope>
        </dependency>

        <dependency>
            <groupId>javax.enterprise</groupId>
            <artifactId>cdi-api</artifactId>
            <version>1.2</version>
        </dependency>

        <dependency>
            <groupId>org.apache.pdfbox</groupId>
            <artifactId>pdfbox</artifactId>
            <version>2.0.24</version>
        </dependency>

        <!-- https://mvnrepository.com/artifact/javax.el/javax.el-api -->
        <dependency>
            <groupId>javax.el</groupId>
            <artifactId>javax.el-api</artifactId>
            <version>3.0.0</version>
        </dependency>

        <!-- https://mvnrepository.com/artifact/org.apache.poi/poi -->
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi</artifactId>
            <version>4.1.2</version>
        </dependency>

        <dependency>
            <groupId>com.openhtmltopdf</groupId>
            <artifactId>openhtmltopdf-core</artifactId>
            <version>1.0.6</version>
        </dependency>
        <!--supports PDF output with Apache PDF-BOX -->
        <dependency>
            <groupId>com.openhtmltopdf</groupId>
            <artifactId>openhtmltopdf-pdfbox</artifactId>
            <version>1.0.6</version>
        </dependency>
        <dependency>
            <groupId>org.jsoup</groupId>
            <artifactId>jsoup</artifactId>
            <version>1.15.3</version>
        </dependency>

        <!-- https://mvnrepository.com/artifact/org.mockito/mockito-all -->
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <version>4.2.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-junit-jupiter</artifactId>
            <version>4.2.0</version>
            <scope>test</scope>
        </dependency>

        <dependency>
            <groupId>org.seleniumhq.selenium</groupId>
            <artifactId>selenium-java</artifactId>
            <version>4.0.0</version>
            <scope>test</scope>
        </dependency>
        <!-- https://mvnrepository.com/artifact/io.github.bonigarcia/webdrivermanager -->
        <dependency>
            <groupId>io.github.bonigarcia</groupId>
            <artifactId>webdrivermanager</artifactId>
            <version>5.0.3</version>
            <scope>test</scope>
        </dependency>

        <!-- https://mvnrepository.com/artifact/com.squareup.okhttp3/okhttp -->
        <dependency>
            <groupId>com.squareup.okhttp3</groupId>
            <artifactId>okhttp</artifactId>
            <version>4.9.3</version>
        </dependency>


        <dependency>
            <groupId>org.primefaces</groupId>
            <artifactId>primefaces</artifactId>
            <version>8.0</version>
        </dependency>

        <!-- https://mvnrepository.com/artifact/org.apache.xmlbeans/xmlbeans -->
        <dependency>
            <groupId>org.apache.xmlbeans</groupId>
            <artifactId>xmlbeans</artifactId>
            <version>4.0.0</version>
        </dependency>

        <!-- https://github.com/powermock/powermock/wiki/Mockito-2-Maven -->
        <dependency>
            <groupId>org.powermock</groupId>
            <artifactId>powermock-module-junit4</artifactId>
            <version>${powermock.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.powermock</groupId>
            <artifactId>powermock-api-mockito2</artifactId>
            <version>${powermock.version}</version>
            <scope>test</scope>
        </dependency>

        <!-- https://mvnrepository.com/artifact/javax.mail/mail -->
        <dependency>
            <groupId>javax.mail</groupId>
            <artifactId>mail</artifactId>
            <version>1.5.0-b01</version>
        </dependency>


        <!--<dependency>
            <groupId>javax.mail</groupId>
            <artifactId>javax.mail-api</artifactId>
            <version>1.6.2</version>
        </dependency>-->

        <dependency>
            <groupId>javax.xml.bind</groupId>
            <artifactId>jaxb-api</artifactId>
            <version>2.3.0</version>
        </dependency>
        <dependency>
            <groupId>com.sun.xml.bind</groupId>
            <artifactId>jaxb-impl</artifactId>
            <version>2.3.0</version>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jaxb</groupId>
            <artifactId>jaxb-runtime</artifactId>
            <version>2.3.0</version>
        </dependency>
        <dependency>
            <groupId>javax.activation</groupId>
            <artifactId>activation</artifactId>
            <version>1.1.1</version>
        </dependency>

        <dependency>
            <groupId>com.google.template</groupId>
            <artifactId>soy</artifactId>
            <version>2015-04-10</version>
        </dependency>

        <dependency>
            <groupId>de.samply</groupId>
            <artifactId>share-dto</artifactId>
            <version>${version.samply.share.dto}</version>
        </dependency>

        <dependency>
            <groupId>de.samply</groupId>
            <artifactId>negotiator-dto</artifactId>
            <version>${version.samply.negotiator.dto}</version>
        </dependency>

        <dependency>
            <groupId>de.samply</groupId>
            <artifactId>common-util</artifactId>
            <version>${version.samply.common.util}</version>
        </dependency>

        <dependency>
            <groupId>de.samply.webjar</groupId>
            <artifactId>samply</artifactId>
            <version>${version.samply.webjar}</version>
        </dependency>

        <dependency>
            <groupId>de.samply</groupId>
            <artifactId>bbmri-auth-client</artifactId>
            <version>${version.samply.auth.client}</version>
        </dependency>

        <dependency>
            <groupId>org.glassfish.jersey.core</groupId>
            <artifactId>jersey-common</artifactId>
        </dependency>

        <dependency>
            <groupId>org.glassfish.jersey.containers</groupId>
            <artifactId>jersey-container-servlet</artifactId>
        </dependency>

        <dependency>
            <groupId>org.glassfish.jersey.media</groupId>
            <artifactId>jersey-media-json-jackson</artifactId>
            <version>2.35</version>
        </dependency>

        <dependency>
            <groupId>org.glassfish.jersey.inject</groupId>
            <artifactId>jersey-hk2</artifactId>
        </dependency>

        <!-- https://mvnrepository.com/artifact/com.google.code.gson/gson -->
        <dependency>
            <groupId>com.google.code.gson</groupId>
            <artifactId>gson</artifactId>
            <version>2.8.9</version>
        </dependency>

        <dependency>
            <groupId>javax.servlet</groupId>
            <artifactId>javax.servlet-api</artifactId>
            <scope>provided</scope>
        </dependency>

        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-core</artifactId>
            <version>2.17.1</version>
        </dependency>

        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-web</artifactId>
            <version>2.17.1</version>
            <scope>runtime</scope>
        </dependency>

        <dependency>
            <groupId>org.jooq</groupId>
            <artifactId>jooq</artifactId>
            <version>3.8.9</version>
        </dependency>

        <dependency>
            <groupId>org.jooq</groupId>
            <artifactId>jooq-meta</artifactId>
            <version>3.8.9</version>
        </dependency>

        <dependency>
            <groupId>org.jooq</groupId>
            <artifactId>jooq-codegen</artifactId>
            <version>3.8.9</version>
        </dependency>

        <dependency>
            <groupId>org.modelmapper</groupId>
            <artifactId>modelmapper</artifactId>
            <version>0.7.5</version>
        </dependency>

        <dependency>
            <groupId>org.modelmapper.extensions</groupId>
            <artifactId>modelmapper-jooq</artifactId>
            <version>0.7.5</version>
        </dependency>

        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
        </dependency>

        <dependency>
           <groupId>commons-configuration</groupId>
           <artifactId>commons-configuration</artifactId>
           <version>1.10</version>
        </dependency>

        <dependency>
            <groupId>fi.solita.clamav</groupId>
            <artifactId>clamav-client</artifactId>
            <version>1.0.1</version>
        </dependency>

        <dependency>
            <groupId>javax.servlet</groupId>
            <artifactId>jstl</artifactId>
            <version>1.1.2</version>
        </dependency>

        <dependency>
            <groupId>org.flywaydb</groupId>
            <artifactId>flyway-core</artifactId>
            <version>4.2.0</version>
        </dependency>

        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
        </dependency>

        <dependency>
            <groupId>com.fasterxml.jackson.jaxrs</groupId>
            <artifactId>jackson-jaxrs-json-provider</artifactId>
            <version>2.14.0</version>
        </dependency>

        <!-- Webjars -->

        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>bootstrap</artifactId>
            <version>3.3.7-1</version>
        </dependency>

        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>font-awesome</artifactId>
            <version>4.7.0</version>
        </dependency>

        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>jquery</artifactId>
            <version>3.3.1</version>
        </dependency>

        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>jquery-ui</artifactId>
            <version>1.12.1</version>
        </dependency>

        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>select2</artifactId>
            <version>4.0.3-1</version>
        </dependency>

        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>datatables</artifactId>
            <version>1.10.16</version>
        </dependency>

        <dependency>
            <groupId>org.webjars.bower</groupId>
            <artifactId>jstree</artifactId>
            <version>3.3.4</version>
        </dependency>
        <dependency>
            <groupId>org.postgresql</groupId>
            <artifactId>postgresql</artifactId>
            <version>42.3.8</version>
            <scope>runtime</scope>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.jetbrains/annotations -->
        <dependency>
            <groupId>org.jetbrains</groupId>
            <artifactId>annotations</artifactId>
            <version>19.0.0</version>
        </dependency>
        <dependency>
            <groupId>org.apache.httpcomponents</groupId>
            <artifactId>httpclient</artifactId>
            <version>4.5.13</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>io.swagger</groupId>
            <artifactId>swagger-jersey2-jaxrs</artifactId>
            <version>1.5.0</version>
        </dependency>
        <dependency>
            <groupId>org.webjars</groupId>
            <artifactId>swagger-ui</artifactId>
            <version>2.2.10-1</version>
        </dependency>
        <dependency>
            <groupId>io.github.git-commit-id</groupId>
            <artifactId>git-commit-id-maven-plugin</artifactId>
            <version>4.9.9</version>
        </dependency>

    </dependencies>

    <profiles>
        <profile>
            <id>mojarra</id>
            <activation>
                <activeByDefault>true</activeByDefault>
            </activation>

            <dependencies>
                <dependency>
                    <groupId>com.sun.faces</groupId>
                    <artifactId>jsf-impl</artifactId>
                </dependency>

                <dependency>
                    <groupId>com.sun.faces</groupId>
                    <artifactId>jsf-api</artifactId>
                </dependency>
            </dependencies>
        </profile>
    </profiles>

    <build>
        <finalName>negotiator</finalName>
        <plugins>
            <plugin>
                <groupId>io.github.git-commit-id</groupId>
                <artifactId>git-commit-id-maven-plugin</artifactId>
                <version>5.0.0</version>
                <executions>
                    <execution>
                        <id>get-the-git-infos</id>
                        <goals>
                            <goal>revision</goal>
                        </goals>
                        <phase>initialize</phase>
                    </execution>
                </executions>
                <configuration>
                    <generateGitPropertiesFile>true</generateGitPropertiesFile>
                    <generateGitPropertiesFilename>${project.build.outputDirectory}/git.properties</generateGitPropertiesFilename>
                    <includeOnlyProperties>
                        <includeOnlyProperty>^git.build.(time|version)$</includeOnlyProperty>
                        <includeOnlyProperty>^git.commit.id.(abbrev|full)$</includeOnlyProperty>
                        <includeOnlyProperty>^git.branch$</includeOnlyProperty>
                    </includeOnlyProperties>
                    <commitIdGenerationMode>full</commitIdGenerationMode>
                    <dotGitDirectory>${project.basedir}/.git</dotGitDirectory>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.jacoco</groupId>
                <artifactId>jacoco-maven-plugin</artifactId>
                <version>0.7.9</version>
                <executions>
                    <execution>
                        <id>prepare-agent</id>
                        <goals>
                            <goal>prepare-agent</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>report</id>
                        <phase>test</phase>
                        <goals>
                            <goal>report</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.19.1</version>
                <configuration>
                    <skipTests>false</skipTests>
                    <forkCount>3</forkCount>
                    <reuseForks>true</reuseForks>
                    <argLine>-Xmx1024m -XX:MaxPermSize=256m</argLine>
                </configuration>
                <dependencies>
                    <dependency>
                        <groupId>org.junit.jupiter</groupId>
                        <artifactId>junit-jupiter-engine</artifactId>
                        <version>5.8.2</version>
                    </dependency>
                    <dependency>
                        <groupId>org.junit.vintage</groupId>
                        <artifactId>junit-vintage-engine</artifactId>
                        <version>5.9.0</version>
                    </dependency>
                </dependencies>
            </plugin>
            <plugin>
                <artifactId>maven-failsafe-plugin</artifactId>
                <version>2.20.1</version>
            </plugin>

            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>build-helper-maven-plugin</artifactId>
                <version>1.10</version>
                <executions>
                    <execution>
                        <id>timestamp-property</id>
                        <goals>
                            <goal>timestamp-property</goal>
                        </goals>
                        <configuration>
                            <name>build.time</name>
                            <pattern>dd/MM/yyyy HH:mm</pattern>
                            <locale>en_US</locale>
                            <timeZone>MET</timeZone>
                        </configuration>
                    </execution>
                </executions>
            </plugin>

            <plugin>

                <!-- Specify the maven code generator plugin -->
                <!-- Use org.jooq for the Open Source edition org.jooq.pro for commercial
                    editions, org.jooq.pro-java-6 for commercial editions with Java 6 support,
                    org.jooq.trial for the free trial edition -->
                <groupId>org.jooq</groupId>
                <artifactId>jooq-codegen-maven</artifactId>
                <version>3.6.4</version>

                <!-- Manage the plugin's dependency. In this example, we'll use a PostgreSQL
                    database -->
                <dependencies>
                    <dependency>
                        <groupId>org.postgresql</groupId>
                        <artifactId>postgresql</artifactId>
                        <version>42.3.8</version>
                    </dependency>
                    <dependency>
                        <groupId>javax.xml.bind</groupId>
                        <artifactId>jaxb-api</artifactId>
                        <version>2.3.0</version> <!-- use a property to define the version you wish to use -->
                    </dependency>
                </dependencies>

                <!-- Specify the plugin configuration. The configuration format is the
                    same as for the standalone code generator -->
                <configuration>

                    <!-- JDBC connection parameters -->
                    <jdbc>
                        <driver>org.postgresql.Driver</driver>
                        <url>jdbc:postgresql://${database.server}:${database.port}/${database.name}</url>
                        <user>${database.username}</user>
                        <password>${database.password}</password>
                    </jdbc>

                    <!-- Generator parameters -->
                    <generator>
                        <database>
                            <name>org.jooq.util.postgres.PostgresDatabase</name>
                            <includes>.*</includes>
                            <excludes>samplyDbVersion</excludes>
                            <inputSchema>public</inputSchema>
                        </database>

                        <generate>
                            <!-- Generation flags: See advanced configuration properties -->


                            <!-- Primary key / foreign key relations should be generated and used.
                                This is a prerequisite for various advanced features. Defaults to true -->


                            <relations>true</relations>

                            <!-- Generate deprecated code for backwards compatibility Defaults to
                                true -->


                            <deprecated>true</deprecated>

                            <!-- Generate instance fields in your tables, as opposed to static fields.
                                This simplifies aliasing. Defaults to true -->


                            <instanceFields>true</instanceFields>

                            <!-- Generate the javax.annotation.Generated annotation to indicate jOOQ
                                version used for source code. Defaults to true -->


                            <generatedAnnotation>true</generatedAnnotation>

                            <!-- Generate jOOQ Record classes for type-safe querying. You can turn
                                this off, if you don't need "active records" for CRUD Defaults to true -->


                            <records>true</records>

                            <!-- Generate POJOs in addition to Record classes for usage of the ResultQuery.fetchInto(Class)
                                API Defaults to false -->


                            <pojos>true</pojos>

                            <!-- Generate immutable POJOs for usage of the ResultQuery.fetchInto(Class)
                                API This overrides any value set in <pojos/> Defaults to false -->


                            <immutablePojos>false</immutablePojos>

                            <!-- Generate interfaces that will be implemented by records and/or pojos.
                                You can also use these interfaces in Record.into(Class<?>) and similar methods,
                                to let jOOQ return proxy objects for them. Defaults to false -->


                            <interfaces>false</interfaces>

                            <!-- Generate DAOs in addition to POJO classes Defaults to false -->


                            <daos>true</daos>

                            <!-- Annotate POJOs and Records with JPA annotations for increased compatibility
                                and better integration with JPA/Hibernate, etc Defaults to false -->


                            <jpaAnnotations>false</jpaAnnotations>

                            <!-- Annotate POJOs and Records with JSR-303 validation annotations Defaults
                                to false -->


                            <validationAnnotations>false</validationAnnotations>

                        </generate>

                        <target>
                            <packageName>de.samply.bbmri.negotiator.jooq</packageName>
                            <directory>./src/main/java</directory>
                        </target>
                    </generator>
                </configuration>
            </plugin>

            <plugin>
                <artifactId>maven-assembly-plugin</artifactId>
                <configuration>
                    <descriptors>
                        <descriptor>src/assembly/pkg.xml</descriptor>
                    </descriptors>
                </configuration>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-war-plugin</artifactId>
                <configuration>
                    <webResources>
                        <resource>
                            <directory>src/main/webapp/META-INF</directory>
                            <filtering>true</filtering>
                            <targetPath>META-INF</targetPath>
                        </resource>
                    </webResources>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <source>8</source>
                    <target>8</target>
                </configuration>
            </plugin>
        </plugins>

        <resources>
            <resource>
                <directory>src/main/resources</directory>
                <filtering>true</filtering>
            </resource>
        </resources>
    </build>

</project>