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workflow_v2 branch change log
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allow trace extraction to work with 0 ROIs
a. allow trace extraction to work with 0 rois · AllenInstitute/ophys_etl_pipelines@001a46e (github.com) -
change np.int and np.float to 'int' and 'float' for compatibility with newer numpy versions where these are deprecated
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denoising fine-tuning
a. improve logging for debugging issues
b. add support for downsample -
trace extraction
a. allow trace extraction to work with zero ROIs -
postprocess_rois
a. include logic to ensure any empty ROI is removed -
event detection
a. remove code dependent on the package FastLZero so it does not need to be imported. Reduplicate the code in the codebase. This is to fix import issues with that package. -
modified motion border check to not flag ROIs that are touching the border. The previous logic flagged ROIs that were touching the right or bottom borders but not the top or left borders.