You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
PRs #433 and #435 represent independent code bases for video generation in ophys_etl. This is an unfortunate by-product of the development work we did in summer 2021 (resulting in the framework in #435) and the more staid QC work we've done since autumn 2021 (resulting in the framework in #433). Both frameworks have been tested and validated. #433 produces videos (really, multipage TIFF files) that the scientists want to see. #435 produces the videos that back the cell_labeling_app. Once both have been merged into ophys_etl, we should try to consolidate the frameworks so that they rely on the same backend code. That way, we only have one set of video generation modules to fix if something ever breaks.
Tasks
Determine how ophys_etl.modules.video code and ophys_etl.utils.video_utils/ophys_etl.utils.thumbnail_video_utils can be consolidated
Write a single backend to support all instances of video generation in ophys_etl
PRs #433 and #435 represent independent code bases for video generation in ophys_etl. This is an unfortunate by-product of the development work we did in summer 2021 (resulting in the framework in #435) and the more staid QC work we've done since autumn 2021 (resulting in the framework in #433). Both frameworks have been tested and validated. #433 produces videos (really, multipage TIFF files) that the scientists want to see. #435 produces the videos that back the cell_labeling_app. Once both have been merged into ophys_etl, we should try to consolidate the frameworks so that they rely on the same backend code. That way, we only have one set of video generation modules to fix if something ever breaks.
Tasks
ophys_etl.modules.video
code andophys_etl.utils.video_utils
/ophys_etl.utils.thumbnail_video_utils
can be consolidatedvideo_filters
module (that name is open for revsion)ophys_etl.modules.video
andophys_etl.utils.thumbnail_video_generator
to the new backendValidation
ophys_etl.modules.video
still produces the downsampled multipage TIFF files the scientists want to use to QC motion correctionophys_etl.utils.thumbnail_video_generator
still produces the thumbnail videos used by the cell_labeling_appThe text was updated successfully, but these errors were encountered: