Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Incorporate median filtered max projection into productionized ophys_etl pipelines (or not) #381

Open
danielsf opened this issue Nov 23, 2021 · 0 comments
Assignees

Comments

@danielsf
Copy link
Contributor

Now that #359 has been merged, we have python code capable of generating the legacy max projection images that Leonard and John's code used to generate. We should decide whether or not to make this a part of our regular pipeline. Options include

  • Having suite2p_registration automatically call median_filtered_max_projection as a sub-module
  • Write a separate queue to run median_filtered_max_projection after motion correction is completed.

We also need to decide if the outputs from this module are going to replace the current, naive np.max(axis=0) maximum projection image being produced by suite2p_registration, or if we want to produce two maximum projection images, a "raw" one and a "filtered" one.

@morriscb morriscb self-assigned this Feb 24, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants