From 4ec0636939e1c70f044a89c8fd69cb5405b7ae71 Mon Sep 17 00:00:00 2001 From: Christopher Date: Tue, 12 Mar 2024 14:32:53 -0700 Subject: [PATCH 1/3] add mpe config moving --- pyproject.toml | 2 +- src/np_workflows/shared/base_experiments.py | 12 ++++++++++++ 2 files changed, 13 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 66fdf3f..f272641 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,7 +10,7 @@ requires-python = "==3.11.*" dependencies = [ "np-services>=0.1.63", "np-session>=0.6.40", - "np-config>=0.4.26", + "np-config>=0.4.27", "ipywidgets>=7", "pydantic>=2", "jupyterlab >= 3.6", diff --git a/src/np_workflows/shared/base_experiments.py b/src/np_workflows/shared/base_experiments.py index daffe0e..b525f03 100644 --- a/src/np_workflows/shared/base_experiments.py +++ b/src/np_workflows/shared/base_experiments.py @@ -781,6 +781,18 @@ def copy_data_files(self) -> None: shutil.copy2(file, self.session.npexp_path) npxc.validate_or_overwrite(self.session.npexp_path / file.name, file) + def copy_mpe_configs(self) -> None: + for path in ( + self.rig.mvr_config, + self.rig.sync_config, + self.rig.camstim_config): + shutil.copy2(path, self.session.npexp_path) + + def copy_files(self) -> None: + """Copy files from raw data storage to session folder for all services.""" + super().copy_files() + self.copy_mpe_configs() + #TODO move this to a dedicated np_service class instead of using ScriptCamstim def run_stim_desktop_theme_script(self, selection: str) -> None: np_services.ScriptCamstim.script = '//allen/programs/mindscope/workgroups/dynamicrouting/ben/change_desktop.py' From 7f7805cbd827c28174c18dc57f8c59dbb270b0ed Mon Sep 17 00:00:00 2001 From: Christopher Date: Thu, 14 Mar 2024 14:37:08 -0700 Subject: [PATCH 2/3] config moving to WithSession base class --- src/np_workflows/shared/base_experiments.py | 23 +++++++++------------ 1 file changed, 10 insertions(+), 13 deletions(-) diff --git a/src/np_workflows/shared/base_experiments.py b/src/np_workflows/shared/base_experiments.py index b525f03..2f2fe97 100644 --- a/src/np_workflows/shared/base_experiments.py +++ b/src/np_workflows/shared/base_experiments.py @@ -260,6 +260,7 @@ def copy_files(self) -> None: """Copy files from raw data storage to session folder for all services.""" self.copy_data_files() self.copy_workflow_files() + self.copy_mpe_configs() if self.session_type != 'hab': self.copy_ephys() @@ -290,7 +291,15 @@ def copy_workflow_files(self) -> None: for _ in (lock, pyproject): shutil.copy2(_, dest) - + + def copy_mpe_configs(self) -> None: + """Copy MPE config files to session folder.""" + for path in ( + self.rig.mvr_config, + self.rig.sync_config, + self.rig.camstim_config): + shutil.copy2(path, self.session.npexp_path) + def save_current_notebook(self) -> None: app = ipylab.JupyterFrontEnd() app.commands.execute('docmanager:save') @@ -780,18 +789,6 @@ def copy_data_files(self) -> None: for file in files: shutil.copy2(file, self.session.npexp_path) npxc.validate_or_overwrite(self.session.npexp_path / file.name, file) - - def copy_mpe_configs(self) -> None: - for path in ( - self.rig.mvr_config, - self.rig.sync_config, - self.rig.camstim_config): - shutil.copy2(path, self.session.npexp_path) - - def copy_files(self) -> None: - """Copy files from raw data storage to session folder for all services.""" - super().copy_files() - self.copy_mpe_configs() #TODO move this to a dedicated np_service class instead of using ScriptCamstim def run_stim_desktop_theme_script(self, selection: str) -> None: From abc16a5531cda38c31c5d42804b7623326e282f4 Mon Sep 17 00:00:00 2001 From: Christopher Date: Thu, 14 Mar 2024 14:41:41 -0700 Subject: [PATCH 3/3] update lockfile --- pdm.lock | 2647 ++++++++++++++++++------------------------------------ 1 file changed, 868 insertions(+), 1779 deletions(-) diff --git a/pdm.lock b/pdm.lock index 7897bd1..061ae19 100644 --- a/pdm.lock +++ b/pdm.lock @@ -4,12 +4,12 @@ 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