From f1f384b8aefb248cec1ddfac6c58b76e21709321 Mon Sep 17 00:00:00 2001 From: egmcbride Date: Wed, 9 Oct 2024 11:27:04 -0700 Subject: [PATCH] update requirements --- requirements.txt | 93 ++++++++++++++++++++++++++++++++---------------- 1 file changed, 63 insertions(+), 30 deletions(-) diff --git a/requirements.txt b/requirements.txt index bf3aa4c..96c1165 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,29 +1,35 @@ adbc-driver-manager==0.7.0 adbc-driver-sqlite==0.7.0 -aind-data-schema -aind_codeocean_api +aind-data-access-api==0.15.0 +aind-data-schema==0.33.3 +aind-session==0.2.5 +aind_codeocean_api==0.5.0 aiobotocore==2.7.0 aiohttp==3.8.6 aioitertools==0.11.0 aiosignal==1.3.1 +allensdk==2.16.2 annotated-types==0.6.0 appdirs==1.4.4 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 +argschema==3.0.4 arrow==1.3.0 asciitree==0.3.3 asttokens==2.4.0 async-timeout==4.0.3 attrs==23.1.0 backcall==0.2.0 +bcrypt==4.2.0 beautifulsoup4==4.12.2 bidsschematools==0.7.2 bleach==6.1.0 -blosc2 +blosc2==2.7.0 boto3==1.28.17 botocore==1.31.64 Bottleneck==1.3.7 bqplot==0.12.42 +cachetools==5.3.3 ccfwidget==0.5.3 certifi==2023.7.22 cffi==1.16.0 @@ -32,6 +38,7 @@ ci-info==0.3.0 click==8.1.7 click-didyoumean==0.3.0 cloudpickle==3.0.0 +codeocean==0.1.5 colorama==0.4.6 colorcet==3.0.1 comm==0.1.4 @@ -40,16 +47,20 @@ contourpy==1.1.1 crc32c==2.3.post0 cryptography==41.0.4 cycler==0.12.1 -dandi -dandischema +dandi==0.62.2 +dandischema==0.10.1 dask==2023.11.0 +dataclasses==0.6 +dataclasses-json==0.6.7 debugpy==1.8.0 decorator==5.1.1 defusedxml==0.7.1 deltalake==0.10.1 dictdiffer==0.9.0 +distro==1.9.0 dnspython==2.4.2 -DynamicRoutingTask +-e git+https://github.com/AllenInstitute/dynamic_routing_analysis@84191305f91a4b21e2804952e39e12b97849aa3b#egg=dynamic_routing_analysis +DynamicRoutingTask==0.1.102 email-validator==2.0.0.post2 entrypoints==0.4 et-xmlfile==1.1.0 @@ -62,12 +73,15 @@ fqdn==1.5.1 frozenlist==1.4.0 fscacher==0.4.0 fsspec==2023.12.2 +future==1.0.0 gast==0.4.0 gevent==23.9.1 +Glymur==0.13.3 greenlet==3.0.0 h5py==3.10.0 -hdmf -hdmf-zarr +hdmf==3.14.4 +hdmf_zarr==0.8.0 +hdmf_zarr_bjh==0.8.1.post1 humanize==4.8.0 idna==3.4 imageio==2.31.5 @@ -93,7 +107,7 @@ itk-core==5.3.0 itk-filtering==5.3.0 itk-meshtopolydata==0.10.0 itk-numerics==5.3.0 -itkwidgets +itkwidgets==0.32.4 jaraco.classes==3.3.0 jedi==0.19.1 Jinja2==3.1.2 @@ -105,7 +119,7 @@ jsonschema-specifications==2023.7.1 jupyter_client==8.4.0 jupyter_core==5.4.0 jupyterlab-pygments==0.2.2 -jupyterlab-widgets +jupyterlab_widgets==3.0.11 keyring==24.2.0 keyrings.alt==5.0.0 kiwisolver==1.4.5 @@ -113,14 +127,18 @@ lazy_loader==0.3 llvmlite==0.42.0 locket==1.0.0 loky==3.4.1 +lxml==5.2.2 markdown-it-py==3.0.0 MarkupSafe==2.1.3 +marshmallow==3.21.3 +matplotlib==3.9.0 matplotlib-inline==0.1.6 mdurl==0.1.2 mistune==3.0.2 more-itertools==10.1.0 msgpack==1.0.7 multidict==6.0.4 +mypy-extensions==1.0.0 natsort==8.4.0 nbclient==0.8.0 nbconvert==7.9.2 @@ -136,13 +154,17 @@ nest-asyncio==1.5.8 networkx==3.1 nlopt==2.6.1 notebook==6.4.13 -npc-ephys -npc-io -npc_sessions -npc-sync -npc-utils -npc_lims -npc_session +npc-ephys==0.1.25 +npc-io==0.1.30 +npc-mvr==0.1.7 +npc-samstim==0.1.4 +npc-stim==0.1.8 +npc-sync==0.1.18 +npc-utils==0.1.3 +npc_lims==0.1.176 +npc_session==0.1.39 +npc_sessions==0.0.244 +nptyping==2.5.0 numba==0.59.0 numcodecs==0.11.0 numexpr==2.8.7 @@ -156,6 +178,7 @@ packaging==23.2 pandas==2.2.0 pandocfilters==1.5.0 param==2.0.1 +paramiko==3.5.0 parso==0.8.3 partd==1.4.1 patsy==0.5.6 @@ -163,24 +186,28 @@ pickleshare==0.7.5 Pillow==10.1.0 platformdirs==3.11.0 plotly==5.13.1 -polars==0.19.3 +polars==1.7.1 probeinterface==0.2.17 prometheus-client==0.18.0 prompt-toolkit==3.0.39 psutil==5.9.6 +psycopg2-binary==2.9.9 pure-eval==0.2.2 py-cpuinfo==9.0.0 py2vega==0.6.1 -pyarrow +pyarrow==16.1.0 pycparser==2.21 pycryptodomex==3.19.0 pyct==0.5.0 -pydantic -pydantic-settings -pydantic_core +pydantic==2.8.0 +pydantic-settings==2.3.4 +pydantic_core==2.20.0 pydbhub-bjh==0.0.9 Pygments==2.16.1 -pynwb +pymongo==4.3.3 +PyNaCl==1.5.0 +pynrrd==1.0.0 +pynwb==2.8.2 pyOpenSSL==23.2.0 pyout==0.7.3 pyparsing==3.1.1 @@ -198,6 +225,7 @@ quantities==0.14.1 redis==5.0.1 referencing==0.30.2 requests==2.31.0 +requests-toolbelt==1.0.0 rfc3339-validator==0.1.4 rfc3987==1.3.8 rich==13.6.0 @@ -206,20 +234,24 @@ ruamel.yaml==0.17.35 ruamel.yaml.clib==0.2.8 s3fs==2023.12.2 s3transfer==0.6.2 +scikit-build==0.18.0 scikit-image==0.22.0 -scikit-learn==1.3.1 -scipy +scikit-learn==1.4.0 +scipy==1.14.0 +seaborn==0.13.2 semantic-version==2.10.0 semver==3.0.2 Send2Trash==1.8.2 SimpleITK==2.3.0 +simplejson==3.19.2 six==1.16.0 soupsieve==2.5 spikeinterface==0.98.2 SQLAlchemy==2.0.22 +sshtunnel==0.4.0 stack-data==0.6.3 statsmodels==0.14.1 -tables +tables==3.9.2 tenacity==8.2.3 terminado==0.18.0 threadpoolctl==3.2.0 @@ -234,6 +266,7 @@ trimesh==4.0.0 types-python-dateutil==2.8.19.14 types-PyYAML==6.0.12.12 types-requests==2.31.0.20240125 +typing-inspect==0.9.0 typing_extensions==4.9.0 tzdata==2023.3 universal-pathlib==0.1.4 @@ -243,15 +276,15 @@ wavpack-numcodecs==0.1.5 wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 -widgetsnbextension +widgetsnbextension==4.0.11 wrapt==1.15.0 -xarray +xarray==2023.9.0 xlrd==2.0.1 xlsx2csv==0.8.1 XlsxWriter==3.1.8 yarl==1.9.2 -zarr==2.16.1 -zarr-checksum +zarr==2.17.2 +zarr-checksum==0.4.0 zipp==3.17.0 zope.event==5.0 zope.interface==6.1