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Update cell-type-wilms-tumor-06 workflow file #824

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sjspielman opened this issue Oct 16, 2024 · 1 comment
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Update cell-type-wilms-tumor-06 workflow file #824

sjspielman opened this issue Oct 16, 2024 · 1 comment
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We'd like to update this module's workflow in run_ cell-type-wilms-tumor-06.yml as follows:

  • Start using the Docker image instead of building the environment with renv from scratch.
  • Similar to how we limited the number of test datasets run through on a PR trigger in the doublet-detection module, we'd like something similar in this module. For this, we can use a flag to specify which datasets to download; either the full project if the trigger is not PR, or a subset of samples if the trigger is a PR.
@sjspielman sjspielman self-assigned this Oct 16, 2024
@sjspielman sjspielman mentioned this issue Oct 16, 2024
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closed by #827

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