Consider expanding wilms tumor label transfer

[sjspielman]

Existing analysis

This discussion pertains to the cell-type-willms-tumor-06 and cell-type-wilms-tumor-14 modules.

Details of modification

Both the cell-type-willms-tumor-06 and cell-type-wilms-tumor-14 modules use the Stewart et al. fetal kidney reference to perform label transfer.
Here are sources for data from that reference:

• https://www.kidneycellatlas.org/
• https://cellxgene.cziscience.com/collections/120e86b4-1195-48c5-845b-b98054105eec

While looking into this reference in a bit more detail as part of #866, I noticed that there are additional label fields here:

• cell_state, which has values na and proliferating
• cell_type_ontology_term_id, which has ontology IDs for cell types
• author_cell_type, which has a different version of cell types but I'm not 100% sure how this information was obtained (the originating paper is paywalled for me)

If anyone wants to do further analysis on Wilms tumor samples with this reference, they might consider whether any of these labels would be useful. The ontology would be useful for putting things into prod and/or comparing more carefully among cell types related along a lineage, too.

This purpose of this discussion is therefore to surface this idea so we remember about these additional columns, for if/when these modules are updated in the future.

Describe your goals

Scientific literature

No response

Other details

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