From 24ec90b5f9fc1fd11e19710b3909ca547c193611 Mon Sep 17 00:00:00 2001
From: Ally Hawkins <ally.hawkins@ccdatalab.org>
Date: Thu, 14 Nov 2024 13:47:31 -0600
Subject: [PATCH 1/3] add rOpenScPCA to lock file

---
 analyses/cell-type-ewings/renv.lock | 25 ++++++++++++++++++++++++-
 1 file changed, 24 insertions(+), 1 deletion(-)

diff --git a/analyses/cell-type-ewings/renv.lock b/analyses/cell-type-ewings/renv.lock
index 2561148d5..4693d301a 100644
--- a/analyses/cell-type-ewings/renv.lock
+++ b/analyses/cell-type-ewings/renv.lock
@@ -3843,6 +3843,29 @@
       ],
       "Hash": "16f095487215acf101cdc3ed3da237cf"
     },
+    "rOpenScPCA": {
+      "Package": "rOpenScPCA",
+      "Version": "0.1.0",
+      "Source": "GitHub",
+      "RemoteType": "github",
+      "RemoteHost": "api.github.com",
+      "RemoteUsername": "AlexsLemonade",
+      "RemoteRepo": "rOpenScPCA",
+      "RemoteRef": "main",
+      "RemoteSha": "fe1cf9f9ad016a1e9724a6274e88a5b841455bf5",
+      "Requirements": [
+        "BiocParallel",
+        "SingleCellExperiment",
+        "bluster",
+        "dplyr",
+        "methods",
+        "pdfCluster",
+        "purrr",
+        "tibble",
+        "tidyr"
+      ],
+      "Hash": "b6805f308a847b08322572b63da51a4d"
+    },
     "rappdirs": {
       "Package": "rappdirs",
       "Version": "0.3.3",
@@ -4173,8 +4196,8 @@
       "Package": "scpcaTools",
       "Version": "0.3.2",
       "Source": "GitHub",
-      "Remotes": "AlexsLemonade/scpcaData, immunogenomics/lisi@v1.0",
       "RemoteType": "github",
+      "Remotes": "AlexsLemonade/scpcaData, immunogenomics/lisi@v1.0",
       "RemoteHost": "api.github.com",
       "RemoteRepo": "scpcaTools",
       "RemoteUsername": "AlexsLemonade",

From c356c2a1425a2a133c88dc3b40b9d37915c17e7e Mon Sep 17 00:00:00 2001
From: Ally Hawkins <ally.hawkins@ccdatalab.org>
Date: Thu, 14 Nov 2024 13:54:55 -0600
Subject: [PATCH 2/3] fix typo on GHA

---
 .github/workflows/docker_cell-type-ewings.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/docker_cell-type-ewings.yml b/.github/workflows/docker_cell-type-ewings.yml
index 86474a96a..bfe846152 100644
--- a/.github/workflows/docker_cell-type-ewings.yml
+++ b/.github/workflows/docker_cell-type-ewings.yml
@@ -49,7 +49,7 @@ jobs:
       - name: Build image
         uses: docker/build-push-action@v6
         with:
-          context: "{{defaultContext}}:analyses/simulate-sce"
+          context: "{{defaultContext}}:analyses/cell-type-ewings"
           push: false
           cache-from: type=gha
           cache-to: type=gha,mode=max

From e791f267fea5b56b39561b03f4136cd7d14486f2 Mon Sep 17 00:00:00 2001
From: Ally Hawkins <ally.hawkins@ccdatalab.org>
Date: Thu, 14 Nov 2024 14:46:14 -0600
Subject: [PATCH 3/3] use larger runner for test build

---
 .github/workflows/docker_cell-type-ewings.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/docker_cell-type-ewings.yml b/.github/workflows/docker_cell-type-ewings.yml
index bfe846152..125c57b1f 100644
--- a/.github/workflows/docker_cell-type-ewings.yml
+++ b/.github/workflows/docker_cell-type-ewings.yml
@@ -40,7 +40,7 @@ jobs:
   test-build:
     name: Test Build Docker Image
     if: github.event_name == 'pull_request' || (contains(github.event_name, 'workflow_') && !inputs.push-ecr)
-    runs-on: ubuntu-latest
+    runs-on: openscpca-22.04-big-disk
 
     steps:
       - name: Set up Docker Buildx