Merge pull request #881 from allyhawkins/allyhawkins/ewings-add-ropen…

…scpca-to-docker Add rOpenScPCA to renv/docker in ewing module
AlexsLemonade · Nov 15, 2024 · ad8b1dc · ad8b1dc
2 parents 0a3d960 + e791f26
commit ad8b1dc
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Showing 2 changed files with 26 additions and 3 deletions.
diff --git a/.github/workflows/docker_cell-type-ewings.yml b/.github/workflows/docker_cell-type-ewings.yml
@@ -40,7 +40,7 @@ jobs:
   test-build:
     name: Test Build Docker Image
     if: github.event_name == 'pull_request' || (contains(github.event_name, 'workflow_') && !inputs.push-ecr)
-    runs-on: ubuntu-latest
+    runs-on: openscpca-22.04-big-disk
 
     steps:
       - name: Set up Docker Buildx
@@ -49,7 +49,7 @@ jobs:
       - name: Build image
         uses: docker/build-push-action@v6
         with:
-          context: "{{defaultContext}}:analyses/simulate-sce"
+          context: "{{defaultContext}}:analyses/cell-type-ewings"
           push: false
           cache-from: type=gha
           cache-to: type=gha,mode=max

diff --git a/analyses/cell-type-ewings/renv.lock b/analyses/cell-type-ewings/renv.lock
@@ -3843,6 +3843,29 @@
       ],
       "Hash": "16f095487215acf101cdc3ed3da237cf"
     },
+    "rOpenScPCA": {
+      "Package": "rOpenScPCA",
+      "Version": "0.1.0",
+      "Source": "GitHub",
+      "RemoteType": "github",
+      "RemoteHost": "api.github.com",
+      "RemoteUsername": "AlexsLemonade",
+      "RemoteRepo": "rOpenScPCA",
+      "RemoteRef": "main",
+      "RemoteSha": "fe1cf9f9ad016a1e9724a6274e88a5b841455bf5",
+      "Requirements": [
+        "BiocParallel",
+        "SingleCellExperiment",
+        "bluster",
+        "dplyr",
+        "methods",
+        "pdfCluster",
+        "purrr",
+        "tibble",
+        "tidyr"
+      ],
+      "Hash": "b6805f308a847b08322572b63da51a4d"
+    },
     "rappdirs": {
       "Package": "rappdirs",
       "Version": "0.3.3",
@@ -4173,8 +4196,8 @@
       "Package": "scpcaTools",
       "Version": "0.3.2",
       "Source": "GitHub",
-      "Remotes": "AlexsLemonade/scpcaData, immunogenomics/[email protected]",
       "RemoteType": "github",
+      "Remotes": "AlexsLemonade/scpcaData, immunogenomics/[email protected]",
       "RemoteHost": "api.github.com",
       "RemoteRepo": "scpcaTools",
       "RemoteUsername": "AlexsLemonade",