AMICI v0.30.0

Please note that the amici JAX model generation introduced in v0.29.0 is experimental, the API may substantially change in the future. Use at your own risk and do not expect backward compatibility.

Features

• Added serialisation for JAX models

  by @FFroehlich in #2608

• Disabled building the C++ extension by default when generating a JAX model

  by @FFroehlich in #2609

• Separate pre-equilibration and dynamic simulation in jax

  by @FFroehlich in #2617

• State reinitialisation in JAX

  by @FFroehlich in #2619

Fixes

• Fixed ModelStateDerived copy ctor (fixes potential segfaults)

  by @dweindl in #2612

• PEtab parameter mapping: fill in fixed parameter values for initial values

  by @dweindl in #2613

• nan-safe log&divide for JAX models

  by @FFroehlich in #2611

Full Changelog: v0.29.0...v0.30.0