AMICI v0.16.1
Fixes:
- Additional package names for finding blas via pkg-config
by @dweindl in #1959 - Changed default interpolation type from hermite to polynomial
by @dweindl in #1960 - PySB import: Change default simplify to work with multiprocessing
by @dweindl in #1961 - Add --no-validate to amici_import_petab
by @dweindl in #1963 - Fix get_model for direct import of swig interface
by @dweindl in #1969 - Fix PytestReturnNotNoneWarning in test_conserved_quantities_demartino.py
by @dweindl in #1968 - Fix MSVC builds / remove -W* flags
by @dweindl in #1972 - Add option to use IDs when plotting trajectories
by @dweindl in #1974 - Fix assignmentRules2observables - skip non-assignment-rule targets
by @dweindl in #1973 - Use std::clock for measuring solver time
by @dweindl in #1982
(Note that this uses cpu-time consumed by all threads) - Fix narrowing-conversion-warning
by @dweindl in #1983 - PEtab import: allow specifying default values for output parameters
by @dweindl in #1987 - Print stacktraces only with debug logging level
by @dweindl in #1985 - Change default ReturnData::status to AMICI_NOT_RUN
by @dweindl in #1984 - Reduce time-tracking overhead
by @dweindl in #1988 - Fix equilibraton status discrepancy
by @plakrisenko in #1991 - Pass model_name to _create_model_output_dir_name
by @FFroehlich in #1994 - CMake: Build with OpenMP support if available
by @dweindl in #2000 - Fix SuiteSparse Makefiles for compiler-paths
by @dweindl in #2003 - CMake: Build with HDF5 support if available
by @dweindl in #1999 - CMake: Fix reading version file on Windows
by @dweindl in #2001 - CMake: raise minimum required version to 3.15
by @dweindl in #2002 - Fix/extend runtime logging
by @FFroehlich in #2005 - Fix error logging in steadystate solver
by @FFroehlich in #2008 - Don't pass
-py3
to swig after 4.1.0
by @FFroehlich in #2010 - SWIG __repr__s for different templated vector classes
by @FFroehlich in #2009 - Matlab: If mex fails, print mex arguments
by @dweindl in #2013 - Simplify OpenBLAS installation on Windows
by @dweindl in #2016 - Remove model name prefix in generated model files
by @dweindl in #2015 - ...
Documentation:
- Restructure sphinx doc
by @dweindl in #1978 - Instructions for AMICI with singularity
by @dweindl in #1964 - Illustrate options for potentially speeding up model import/simulation
by @dweindl in #1965 - ...
Dependencies:
Full Changelog: v0.16.0...v0.16.1