diff --git a/CHANGELOG.md b/CHANGELOG.md index d4c667b7c7..3a46670e10 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,60 @@ See also our [versioning policy](https://amici.readthedocs.io/en/latest/versioni ## v0.X Series +### v0.29.0 (2024-11-28) + +**Fixes** + +* Fixed race conditions in froot, which could have resulted in incorrect + simulation results for models with events/heavisides/piecewise, for + multi-threaded simulations. + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2587 + +* Fixed race conditions for the max-time check, which could have resulted in + incorrect termination of simulations in case of multi-threaded simulations + in combination with a time limit. + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2587 + +* Added missing fields in ExpData HDF5 I/O + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2593 + +* Added missing fields in ReturnData HDF5 output + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2602 + + +* **Features** + +* Generate models in a JAX-compatible format + ([example](https://amici.readthedocs.io/en/develop/ExampleJaxPEtab.html)) + + by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1861 + +* Faster `fill_in_parameters_for_condition` + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2586 + +* Added Python function `writeSimulationExpData` for writing ExpData to HDF5 + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2588 + +* Improved import of amici-generated models via `amici.import_model_module()`. + + So far, it was not possible to import different model modules with the same + name. This is now possible if they are in different directories. + Overwriting an already imported module is still not possible (and never + was); any attempts to do so will raise a `RuntimeError`. + While model packages can, in principle, be imported using regular + `import`s, it is strongly recommended to use `amici.import_model_module()`. + + by @dweindl in https://github.com/AMICI-dev/AMICI/pull/2604, https://github.com/AMICI-dev/AMICI/pull/2603, https://github.com/AMICI-dev/AMICI/pull/2596 + +**Full Changelog**: https://github.com/AMICI-dev/AMICI/compare/v0.28.0...v0.29.0 + + ### v0.28.0 (2024-11-11) **Breaking changes** diff --git a/version.txt b/version.txt index 697f087f37..ae6dd4e203 100644 --- a/version.txt +++ b/version.txt @@ -1 +1 @@ -0.28.0 +0.29.0