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modeling_bert.py
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modeling_bert.py
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# code from huggingface transformers 4.17.0
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BERT model."""
import importlib
import math
import os
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple
import torch
import torch.utils.checkpoint
from packaging import version
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from transformers.activations import ACT2FN
from transformers.file_utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from transformers.modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
NextSentencePredictorOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from transformers.modeling_utils import (
PreTrainedModel,
apply_chunking_to_forward,
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from transformers.utils import logging
from transformers.models.bert.configuration_bert import BertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "bert-base-uncased"
_CONFIG_FOR_DOC = "BertConfig"
_TOKENIZER_FOR_DOC = "BertTokenizer"
BERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"bert-base-uncased",
"bert-large-uncased",
"bert-base-cased",
"bert-large-cased",
"bert-base-multilingual-uncased",
"bert-base-multilingual-cased",
"bert-base-chinese",
"bert-base-german-cased",
"bert-large-uncased-whole-word-masking",
"bert-large-cased-whole-word-masking",
"bert-large-uncased-whole-word-masking-finetuned-squad",
"bert-large-cased-whole-word-masking-finetuned-squad",
"bert-base-cased-finetuned-mrpc",
"bert-base-german-dbmdz-cased",
"bert-base-german-dbmdz-uncased",
"cl-tohoku/bert-base-japanese",
"cl-tohoku/bert-base-japanese-whole-word-masking",
"cl-tohoku/bert-base-japanese-char",
"cl-tohoku/bert-base-japanese-char-whole-word-masking",
"TurkuNLP/bert-base-finnish-cased-v1",
"TurkuNLP/bert-base-finnish-uncased-v1",
"wietsedv/bert-base-dutch-cased",
# See all BERT models at https://huggingface.co/models?filter=bert
]
def get_cls_by_name(name: str) -> type:
"""Get class by its name and module path.
Args:
name (str): e.g., transfomers:T5ForConditionalGeneration, modeling_t5:my_class
Returns:
type: found class for `name`
"""
module_name, cls_name = name.split(':')
return getattr(importlib.import_module(module_name), cls_name)
def load_tf_weights_in_bert(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model
class BertEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
if config.position_embedding_type == 'absolute':
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
if version.parse(torch.__version__) > version.parse("1.6.0"):
self.register_buffer(
"token_type_ids",
torch.zeros(self.position_ids.size(), dtype=torch.long),
persistent=False,
)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length: seq_length + past_key_values_length]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class BertSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None, has_relative_attention_bias=False):
"""Bert self-attention with abs/relative position encodings and sparsity.
Args:
config: HF model configuration loaded from json
position_embedding_type (str, optional): absolute, relative_key, relative_key_query or
relative_attention_bias . Defaults to None.
has_relative_attention_bias (bool, optional): Use it's own relative embeddings matrix. Defaults to False.
"""
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.config = config
self.is_decoder = config.is_decoder
# max_seq_len is used in absolute, relative_key & relative_key_query and to pre-define sparsity layout
self.max_seq_len = config.max_position_embeddings
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
# sparse attention configuration
self.is_sparse = False
sparse_config_cls_name = getattr(config, 'sparse_config_cls', None)
if sparse_config_cls_name:
self.is_sparse = True
sparse_config_cls = get_cls_by_name(sparse_config_cls_name)
self.sparse_config = sparse_config_cls(**self.config.sparse_attention)
if self.is_decoder and self.is_sparse:
raise RuntimeError('SparseAttention with BertModel decoder is not currently supported!')
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.softmax = nn.Softmax(dim=-1)
self.position_embedding_type = position_embedding_type or getattr(config, "position_embedding_type", "absolute")
self.has_relative_attention_bias = has_relative_attention_bias
if self.is_sparse and self.position_embedding_type not in ['absolute', 'relative_attention_bias', 'rotary']:
raise RuntimeError(f'SparseAttention supports `absolute`, `relative_attention_bias` and `rotary` position '
f'embeddings, but: position_embeddings_type = {self.position_embedding_type}')
if self.is_decoder and self.position_embedding_type == 'relative_attention_bias':
raise RuntimeError(f'BertSelfAttention does not support `relative_attention_bias` with `is_decoder` '
f' = {self.is_decoder}')
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.max_seq_len = 2 * config.max_position_embeddings
self.distance_embedding = nn.Embedding(self.max_distance - 1, self.attention_head_size)
elif self.position_embedding_type == 'relative_attention_bias' and self.has_relative_attention_bias:
self.relative_attention_num_buckets = self.config.relative_attention_num_buckets
self.relative_last_bucket_distance = self.config.relative_last_bucket_distance
self.relative_attention_bias = nn.Embedding(self.relative_attention_num_buckets, self.num_attention_heads)
elif self.position_embedding_type == 'rotary':
self.rotary_base = getattr(config, 'rotary_base', None)
self.rotary_dim = getattr(config, 'rotary_dim', self.attention_head_size)
self.rotary_emb = RotaryEmbedding(self.rotary_dim, base=self.rotary_base)
if self.is_sparse:
try:
from deepspeed.ops.sparse_attention import SparseSelfAttention
except ImportError as e:
logger.error(f'DeepSpeed is required for Sparse Ops: {e}')
raise
self.sparse_self_attention = SparseSelfAttention(self.sparse_config, max_seq_length=self.max_seq_len)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def transpose_key_for_scores(self, x):
# to remove redundant transpose in attention_scores matmul operation
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 3, 1)
@staticmethod
def _relative_position_bucket(relative_position, bidirectional=True, num_buckets=32, max_distance=128):
"""
Adapted from Mesh Tensorflow:
https://github.com/tensorflow/mesh/blob/0cb87fe07da627bf0b7e60475d59f95ed6b5be3d/mesh_tensorflow/transformer/transformer_layers.py#L593
#todo: refactor, the same code is used in modeling_t5
Translate relative position to a bucket number for relative attention. The relative position is defined as
memory_position - query_position, i.e. the distance in tokens from the attending position to the attended-to
position. If bidirectional=False, then positive relative positions are invalid. We use smaller buckets for
small absolute relative_position and larger buckets for larger absolute relative_positions. All relative
positions >=max_distance map to the same bucket. All relative positions <=-max_distance map to the same bucket.
This should allow for more graceful generalization to longer sequences than the model has been trained on
Args:
relative_position: an int32 Tensor
bidirectional: a boolean - whether the attention is bidirectional
num_buckets: an integer
max_distance: an integer
Returns:
a Tensor with the same shape as relative_position, containing int32 values in the range [0, num_buckets)
"""
relative_buckets = 0
if bidirectional:
num_buckets //= 2
relative_buckets += (relative_position > 0).to(torch.long) * num_buckets
relative_position = torch.abs(relative_position)
else:
relative_position = -torch.min(relative_position, torch.zeros_like(relative_position))
# now relative_position is in the range [0, inf)
# half of the buckets are for exact increments in positions
max_exact = num_buckets // 2
is_small = relative_position < max_exact
# The other half of the buckets are for logarithmically bigger bins in positions up to max_distance
relative_postion_if_large = max_exact + (
torch.log(relative_position.float() / max_exact)
/ math.log(max_distance / max_exact)
* (num_buckets - max_exact)
).to(torch.long)
relative_postion_if_large = torch.min(
relative_postion_if_large, torch.full_like(relative_postion_if_large, num_buckets - 1)
)
relative_buckets += torch.where(is_small, relative_position, relative_postion_if_large)
return relative_buckets
def compute_bias(self, query_length, key_length):
""" Compute binned relative position bias """
context_position = torch.arange(query_length, dtype=torch.long)[:, None]
memory_position = torch.arange(key_length, dtype=torch.long)[None, :]
relative_position = memory_position - context_position # shape (query_length, key_length)
relative_position_bucket = self._relative_position_bucket(
relative_position, # shape (query_length, key_length)
bidirectional=(not self.is_decoder),
num_buckets=self.relative_attention_num_buckets,
max_distance=self.relative_last_bucket_distance,
)
relative_position_bucket = relative_position_bucket.to(self.relative_attention_bias.weight.device)
values = self.relative_attention_bias(relative_position_bucket) # shape (query_length, key_length, num_heads)
values = values.permute([2, 0, 1]).unsqueeze(0) # shape (1, num_heads, query_length, key_length)
return values
def get_relative_attention_bias(self, position_bias, batch_size, query_length, key_length):
if position_bias is None and self.has_relative_attention_bias:
position_bias = self.compute_bias(query_length, key_length)
position_bias = position_bias.repeat(batch_size, 1, 1, 1)
return position_bias
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
position_bias=None,
output_attentions=False,
):
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_key_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_key_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_key_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
bs, seq_len, _ = hidden_states.shape
# query shape: bs x n_heads x seq_len x head_dim
# key shape: bs x n_heads x head_dim x seq_len
if self.position_embedding_type == 'rotary':
# todo: in key_layer and value_layer past states already concatenated
# but rotary embeddings should not be applied to past states
if past_key_value is not None:
raise RuntimeError(f'past_key_values is not None are not supported in BertSelfAttention.forward with '
f'position_embedding_type = {self.position_embedding_type}.')
# traspose to bs x n_heads x seq_len x head_dim
key_layer = key_layer.transpose(-1, -2)
if self.rotary_dim < self.attention_head_size:
query_rot = query_layer[..., :self.rotary_dim]
query_pass = query_layer[..., self.rotary_dim:]
key_rot = key_layer[..., :self.rotary_dim]
key_pass = key_layer[..., self.rotary_dim:]
else: # full rotary
query_rot = query_layer
key_rot = key_layer
cos, sin = self.rotary_emb(key_rot, seq_len=seq_len)
query_layer, key_layer = apply_rotary_pos_emb(query_rot, key_rot, cos, sin, offset=0)
if self.rotary_dim < self.attention_head_size:
query_layer = torch.cat((query_layer, query_pass), dim=-1)
key_layer = torch.cat((key_layer, key_pass), dim=-1)
# transpose to bs x n_heads x head_dim x seq_len
key_layer = key_layer.transpose(-1, -2)
if not self.is_sparse:
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer)
if self.position_embedding_type in ["relative_key", "relative_key_query"]:
position_ids_l = torch.arange(seq_len, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_len, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
# https://arxiv.org/abs/2009.13658
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhdr,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
elif self.position_embedding_type == 'relative_attention_bias':
position_bias = self.get_relative_attention_bias(position_bias, bs, seq_len, seq_len)
attention_scores = attention_scores + position_bias
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = self.softmax(attention_scores)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
else:
# sparse attention
# todo: return attention_probs
# todo: support relative_key -> need to change einsum with sparse operators..
# sparse attention supports masks with following shapes:
# key_padding_mask: (bs x seq_len) or (bs x 1 x 1 x seq_len)
# attention_mask: seq_len x seq_len or (1 x 1 x seq_len x seq_len)
if self.position_embedding_type == 'relative_attention_bias':
position_bias = self.get_relative_attention_bias(position_bias, bs, seq_len, seq_len)
query_dtype = query_layer.dtype
if query_dtype != torch.half:
# deepspeed sparse_self_attention supports only fp16 inputs
# manually cast to half in case if running in fp32 or O1 modes
query_layer, key_layer, value_layer = query_layer.half(), key_layer.half(), value_layer.half()
# attention_mask = attention_mask.half()
if position_bias is not None:
position_bias = position_bias.half()
context_layer = self.sparse_self_attention(query_layer, key_layer, value_layer, rpe=position_bias,
key_padding_mask=attention_mask)
if query_dtype == torch.float:
context_layer = context_layer.float()
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
if self.is_sparse and output_attentions:
# todo: return sparse attention_scores or None, to not break the run
raise RuntimeError(f'SparseAttention does not support output_attention = {output_attentions}')
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.position_embedding_type == 'relative_attention_bias':
outputs = outputs + (position_bias,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
class BertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.pre_layer_norm = getattr(config, 'pre_layer_norm', False)
self.bert_output_layer = True
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
if not self.pre_layer_norm:
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
if not self.pre_layer_norm:
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertAttention(nn.Module):
def __init__(self, config, position_embedding_type=None, has_relative_attention_bias=False):
super().__init__()
self.self = BertSelfAttention(config, position_embedding_type=position_embedding_type,
has_relative_attention_bias=has_relative_attention_bias)
self.output = BertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
position_bias=None,
output_attentions=False,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
position_bias,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class BertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class BertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.pre_layer_norm = getattr(config, 'pre_layer_norm', False)
self.bert_output_layer = True
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
if not self.pre_layer_norm:
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
if not self.pre_layer_norm:
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertLayer(nn.Module):
def __init__(self, config, has_relative_attention_bias=False):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.pre_layer_norm = getattr(config, 'pre_layer_norm', False)
if self.pre_layer_norm:
self.pre_attention_ln = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.post_attention_ln = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.attention = BertAttention(config, has_relative_attention_bias=has_relative_attention_bias)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = BertAttention(config, position_embedding_type="absolute")
self.intermediate = BertIntermediate(config)
self.output = BertOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
position_bias=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states if not self.pre_layer_norm else self.pre_attention_ln(hidden_states),
attention_mask,
head_mask,
position_bias=position_bias,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
position_bias,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
if self.pre_layer_norm:
attention_output = hidden_states + attention_output
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_inp = attention_output if not self.pre_layer_norm else self.post_attention_ln(attention_output)
intermediate_output = self.intermediate(intermediate_inp)
layer_output = self.output(intermediate_output, attention_output)
if self.pre_layer_norm:
layer_output = layer_output + attention_output
return layer_output
class BertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.pre_layer_norm = getattr(config, 'pre_layer_norm', False)
# last_layer_ln is used with pre_layer_norm:
# pre_layer_norm: https://arxiv.org/abs/2002.04745
# x = x + mha(ln(x))
# x = x + ffn(mha)
# if last_layer:
# x = ln(x)
# post_layer_norm (standart bert):
# x = ln(x + mha(x))
# x = ln(x + ffn(x))
self.last_layer_norm = getattr(config, 'last_layer_norm', self.pre_layer_norm)
if not self.pre_layer_norm and self.last_layer_norm:
raise RuntimeError('last_layer_norm could be used only with pre_layer_norm=True')
self.layer = nn.ModuleList(
[BertLayer(config, has_relative_attention_bias=bool(i == 0)) for i in range(config.num_hidden_layers)]
)
self.gradient_checkpointing = False
if self.pre_layer_norm and self.last_layer_norm:
self.last_layer_ln = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
position_bias = None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, position_bias, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
position_bias,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if self.config.position_embedding_type == 'relative_attention_bias':
if not output_attentions:
position_bias = layer_outputs[1]
else:
position_bias = layer_outputs[2]
if self.pre_layer_norm and self.last_layer_norm:
hidden_states = self.last_layer_ln(hidden_states)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class BertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class BertPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class BertLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = BertPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
class BertOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = BertLMPredictionHead(config)
def forward(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
class BertOnlyNSPHead(nn.Module):
def __init__(self, config):
super().__init__()
self.seq_relationship = nn.Linear(config.hidden_size, 2)
def forward(self, pooled_output):
seq_relationship_score = self.seq_relationship(pooled_output)
return seq_relationship_score
class BertPreTrainingHeads(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = BertLMPredictionHead(config)
self.seq_relationship = nn.Linear(config.hidden_size, 2)
def forward(self, sequence_output, pooled_output):
prediction_scores = self.predictions(sequence_output)
seq_relationship_score = self.seq_relationship(pooled_output)
return prediction_scores, seq_relationship_score
class BertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BertConfig
load_tf_weights = load_tf_weights_in_bert
base_model_prefix = "bert"
supports_gradient_checkpointing = True
_keys_to_ignore_on_load_missing = [r"position_ids"]
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
std = self.config.initializer_range
if hasattr(module, 'bert_output_layer') and self.config.pre_layer_norm:
std /= math.sqrt(2.0 * self.config.num_hidden_layers)
module.weight.data.normal_(mean=0.0, std=std)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, BertEncoder):
module.gradient_checkpointing = value