From 37c56bc6a87d61f5713fc95f360b46ce49ed4037 Mon Sep 17 00:00:00 2001
From: David Michaels <david_michaels@hms.harvard.edu>
Date: Tue, 9 Jul 2024 16:29:20 -0400
Subject: [PATCH] raw strings for re in awsem.py

---
 tibanna/awsem.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tibanna/awsem.py b/tibanna/awsem.py
index b8f2f83e..888c7a31 100755
--- a/tibanna/awsem.py
+++ b/tibanna/awsem.py
@@ -393,7 +393,7 @@ def as_dict(self):
 
 def file2cwlfile(filename, dirname, unzip):
     if unzip:
-        filename = re.match('(.+)\.{0}$'.format(unzip), filename).group(1)
+        filename = re.match(r'(.+)\.{0}$'.format(unzip), filename).group(1)
     if dirname.endswith('/'):
         dirname = dirname.rstrip('/')
     return {"class": 'File', "path": dirname + '/' + filename}
@@ -401,7 +401,7 @@ def file2cwlfile(filename, dirname, unzip):
 
 def file2wdlfile(filename, dirname, unzip):
     if unzip:
-        filename = re.match('(.+)\.{0}$'.format(unzip), filename).group(1)
+        filename = re.match(r'(.+)\.{0}$'.format(unzip), filename).group(1)
     if dirname.endswith('/'):
         dirname = dirname.rstrip('/')
     return dirname + '/' + filename