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docker-4dn-fastq-first-line

The current version of this pipeline pulls the Docker image from a public AWS Elastic Container Registry. If you prefer to pull from Docker Hub (DH), please use the tagged version utilizing DH: v2_DH.

This Docker image is used to run a quality control measure for fastq files. The script simply saves the first line of a fastq file to ensure it is valid.

Building the Docker image

You need the Docker daemon to rebuild this Docker image. If you want to push it to a different Docker repo, replace 4dndcic/4dn-fastq-first-line:v2 with your desired Docker repo name. You need permission to push to 4dndcic/4dn-fastq-first-line:v2.

docker build -t 4dn-fastq-first-line:v2 .
docker push 4dn-fastq-first-line:v2

You can skip this if you want to use an already built image on Docker Hub (image name 4dn-fastq-first-line:v2) or AWS ECR (image name public.ecr.aws/dcic-4dn/4dn-fastq-first-line:v2)